R Package Installation
From CRAN
A '.tar.gz' package can be downloaded directly from CRAN and installed to your local R library.
From the terminal:
$R CMD INSTALL Plasmidprofiler_X.X.X.tar.gz
Then inside your R session run the following command:
library(Plasmidprofiler)
Install in RStudio
If using RStudio then installation is as easy as clicking 'install' on the packages pane and searching for 'Plasmidprofiler' from the CRAN repository. Be sure to install all dependencies as well.
Installed dependencies
All available from CRAN.
ape
dplyr
gdata
ggdendro
ggplot2
grid
gridExtra
gtable
htmlwidgets
magrittr
plotly
plyr
RColorBrewer
reshape2
stringr
Explanation of the R Package Functions
See the Plasmid Profiler Reference Manual for details on the R package functions.